rs16808087 SNP Detail

Summary

• ID
  rs16808087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:28227103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCGCCAC CGCGGAGCTC
  TGCGCCCTCC GTCCTCTCGC TCTGTTCTCT CTGGAAAGGC GGGGGGGTGG AAAGAAGAAG
  GTTAACCCGA AGAAAGGAAG AAAGAAAGAA GGGGACCAGA AGGGGGAAGC CAACGTTCCC
  CCACAGGCTA GCTGTCCATC AACCGCTCAA GCCACCAAGC GGCAGAAAGT TCAGGGCTGC
  Y
  TTGAACCCAT TTTCTTTGCG CCTGGTTTTT GCCAGACTCT AAAATGAAAG GACAAAATTT
  GGCGCTGACT CTTGCAGCTC TGATGGCGAC TTGTGCGATT TCAGCGGCAT CTCCCGGAGA
  AAAAACCATG CGTGCCTGAT TGTTCTGTGG TCCCATAGCC GCCGCCGCTG CTGCTGCTCT
  GTGTGTGTGT GTGTGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762994	Wnt5a_JC9650_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808087					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28227103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	within coordinates
Rr489628	regulatory region 489628	386 bp distal
Rr489629	regulatory region 489629	68 bp distal
Rr489630	regulatory region 489630	101 bp proximal
Tssr124778	transcription start site region 124778	541 bp downstream
Tssr124779	transcription start site region 124779	490 bp downstream
Tssr124780	transcription start site region 124780	457 bp downstream
Tssr124781	transcription start site region 124781	384 bp downstream
Tssr124782	transcription start site region 124782	320 bp downstream
Tssr124783	transcription start site region 124783	317 bp upstream
Tssr124784	transcription start site region 124784	349 bp upstream
Tssr124785	transcription start site region 124785	396 bp upstream
Tssr124786	transcription start site region 124786	460 bp upstream
Tssr124787	transcription start site region 124787	613 bp upstream
Tssr124788	transcription start site region 124788	635 bp upstream
Tssr124789	transcription start site region 124789	671 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	mRNA-UTR