rs16808091 SNP Detail

Summary

• ID
  rs16808091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:28227434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGCCTGAT TGTTCTGTGG
  TCCCATAGCC GCCGCCGCTG CTGCTGCTCT GTGTGTGTGT GTGTGTGTCT GTGTGTGTGT
  GTGAGCGCGT GTCTCTGTGT CTGCGTGTGT GTGCGTTTGT GTGTGTGTAT GTGTGTGTGT
  TTGGGTGTGT GTCTGTGTGT ACACAGAGGT TCACTAGCTA ACTCAGCTGC AGGAGCAGTC
  Y
  CTGGAAGCAG ACGTTTCGGC CACAGACCCA GAGAGGAGGA GCTGACAATC AGGAGGCGTG
  AGCCGCCTGG AGTCTGCAGA ATTCGTGGTG TGAATGAACT GGGGGCATCT TGGGCACAGG
  GATTGCCCCC CCTCCTTCCC CGCCTCGGGC CACAGTTGAG TAGTGGGGCA TTTTTTTTCA
  CCTTCTTGTG AAGAATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24762998	Wnt5a_JC9650_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16808091					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28227434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6258	CpG island 6258	within coordinates
Rr489628	regulatory region 489628	717 bp distal
Rr489629	regulatory region 489629	399 bp distal
Rr489630	regulatory region 489630	209 bp distal
Tssr124778	transcription start site region 124778	872 bp downstream
Tssr124779	transcription start site region 124779	821 bp downstream
Tssr124780	transcription start site region 124780	788 bp downstream
Tssr124781	transcription start site region 124781	715 bp downstream
Tssr124782	transcription start site region 124782	651 bp downstream
Tssr124783	transcription start site region 124783	within coordinates
Tssr124784	transcription start site region 124784	18 bp upstream
Tssr124785	transcription start site region 124785	65 bp upstream
Tssr124786	transcription start site region 124786	129 bp upstream
Tssr124787	transcription start site region 124787	282 bp upstream
Tssr124788	transcription start site region 124788	304 bp upstream
Tssr124789	transcription start site region 124789	340 bp upstream
Wnt5a	wingless-type MMTV integration site family, member 5A	within coordinates