rs16811947 SNP Detail

Summary

• ID
  rs16811947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCGCACTTC ACACACACAA AGATGCACAC
  ACGTACACAT AGTTAAAAAC GATAAAAACG AACTTTTTTT GTTTGTTTTt tgttgttgtt
  gttgttgttT TCCTTTGttt gtttctttcg agacagggtt tctctgtata gccctggctg
  tcctggaact cactttgtag accaggctgg ccttgaactc agaaatcctc ctgcctctgc
  Y
  tcccaagtgc tgggatcaaa ggcgtgcgcc accaccgccc ggcAAAACAA ACTATTTTTA
  AGAAGAGCTT GTGAGGGATA ANGGAAACTT GATCTGGCTT CTTGGAGTNC TCAAAGCANN
  NTCTGGTGNC ATCCCTGCCT CNTGTCTTCT CAGTGACACT TANATTCCCA CCTTCCTGTC
  CTGCTCTGTC CCNAGCCCTA CCAGCTCATC CCCTGNAACC ATNCCATGGT GATGTGAGGA
  CAGCAGAGAC CTCTCCTGTG TCTTGTACCT GCATCTATGG CCACCCAGTG TGTTTACTCT
  GATTCAGTCT GCAGAGGTGC AGCNACCACC AAAGCAAGGT CAGGGACCTC TGACTCAACT
  NTCTCATGTC CTCNTCCTTT AATGTATCGG AGACTTGATC TTTGGTTCCC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767099	Ela1_AN6765_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811947					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580215 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	586 bp proximal
Rr301614	regulatory region 301614	1586 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	1070 bp upstream
Tssr136478	transcription start site region 136478	749 bp upstream
Tssr136479	transcription start site region 136479	415 bp upstream
Tssr136480	transcription start site region 136480	403 bp upstream
Tssr136481	transcription start site region 136481	383 bp upstream
Tssr136482	transcription start site region 136482	377 bp upstream
Tssr136483	transcription start site region 136483	360 bp upstream
Tssr136484	transcription start site region 136484	293 bp upstream
Tssr136485	transcription start site region 136485	263 bp upstream
Tssr136486	transcription start site region 136486	498 bp downstream
Tssr136487	transcription start site region 136487	586 bp downstream
Tssr136488	transcription start site region 136488	614 bp downstream
Tssr136489	transcription start site region 136489	646 bp downstream
Tssr136490	transcription start site region 136490	675 bp downstream
Tssr136491	transcription start site region 136491	968 bp downstream