rs16811953 SNP Detail

Summary

• ID
  rs16811953
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                          TCGCACTT CACACACACA AAGATGCACA CACGTACACA
  TAGTTAAAAA CGATAAAAAC GAACTTTTTT TGTTTGTTTT ttgttgttgt tgttgttgtt
  TTCCTTTGtt tgtttctttc gagacagggt ttctctgtat agccctggct gtcctggaac
  tcactttgta gaccaggctg gccttgaact cagaaatcct cctgcctctg cntcccaagt
  gctgggatca aaggcgtgcg ccaccaccgc ccggcAAAAC AAACTATTTT TAAGAAGAGC
  TTGTGAGGGA TAANGGAAAC TTGATCTGGC TTCTTGGAGT NCTCAAAGCA NNNTCTGGTG
  M
  CATCCCTGCC TCNTGTCTTC TCAGTGACAC TTANATTCCC ACCTTCCTGT CCTGCTCTGT
  CCCNAGCCCT ACCAGCTCAT CCCCTGNAAC CATNCCATGG TGATGTGAGG ACAGCAGAGA
  CCTCTCCTGT GTCTTGTACC TGCATCTATG GCCACCCAGT GTGTTTACTC TGATTCAGTC
  TGCAGAGGTG CAGCNACCAC CAAAGCAAGG TCAGGGACCT CTGACTCAAC TNTCTCATGT
  CCTCNTCCTT TAATGTATCG GAGACTTGAT CTTTGGTTCC C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767105	Ela1_AN6765_7	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811953					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580344 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	457 bp proximal
Rr301614	regulatory region 301614	1457 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	1199 bp upstream
Tssr136478	transcription start site region 136478	878 bp upstream
Tssr136479	transcription start site region 136479	544 bp upstream
Tssr136480	transcription start site region 136480	532 bp upstream
Tssr136481	transcription start site region 136481	512 bp upstream
Tssr136482	transcription start site region 136482	506 bp upstream
Tssr136483	transcription start site region 136483	489 bp upstream
Tssr136484	transcription start site region 136484	422 bp upstream
Tssr136485	transcription start site region 136485	392 bp upstream
Tssr136486	transcription start site region 136486	369 bp downstream
Tssr136487	transcription start site region 136487	457 bp downstream
Tssr136488	transcription start site region 136488	485 bp downstream
Tssr136489	transcription start site region 136489	517 bp downstream
Tssr136490	transcription start site region 136490	546 bp downstream
Tssr136491	transcription start site region 136491	839 bp downstream