rs16811955 SNP Detail

Summary

• ID
  rs16811955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGGCCT TGAACTCAGA
  AATCCTCCTG CCTCTGCCTC CCAAGTGCTG GGATCAAAGG CGTGCGCCAC CACCGCCCGG
  CAAAACAAAC TATTTTTAAG AAGAGCTTGT GAGGGATAAT GGAAACTTGA TCTGGCTTCT
  TGGAGTCCTC AAAGCAATGT CTGGTGACAT CCCTGCCTCG TGTCTTCTCA GTGACACTTA
  Y
  ATTCCCACCT TCCTGTCCTG CTCTGTCCCC AGCCCTACCA GCTCATCCCC TGGAACCATC
  CCATGGTGAT GTGAGGACAG CAGAGACCTC TCCTGTGTCT TGTACCTGCA TCTATGGCCA
  CCCAGTGTGT TTACTCTGAT TCAGTCTGCA GAGGTGCAGC GACCACCAAA GCAAGGTCAG
  GGACCTCTGA CTCAACTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767107	Ela1_AN6765_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811955					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580378 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	423 bp proximal
Rr301614	regulatory region 301614	1423 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	1233 bp upstream
Tssr136478	transcription start site region 136478	912 bp upstream
Tssr136479	transcription start site region 136479	578 bp upstream
Tssr136480	transcription start site region 136480	566 bp upstream
Tssr136481	transcription start site region 136481	546 bp upstream
Tssr136482	transcription start site region 136482	540 bp upstream
Tssr136483	transcription start site region 136483	523 bp upstream
Tssr136484	transcription start site region 136484	456 bp upstream
Tssr136485	transcription start site region 136485	426 bp upstream
Tssr136486	transcription start site region 136486	335 bp downstream
Tssr136487	transcription start site region 136487	423 bp downstream
Tssr136488	transcription start site region 136488	451 bp downstream
Tssr136489	transcription start site region 136489	483 bp downstream
Tssr136490	transcription start site region 136490	512 bp downstream
Tssr136491	transcription start site region 136491	805 bp downstream