rs16811957 SNP Detail

Summary

• ID
  rs16811957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGGCGT GCGCCACCAC
  CGCCCGGCAA AACAAACTAT TTTTAAGAAG AGCTTGTGAG GGATAATGGA AACTTGATCT
  GGCTTCTTGG AGTCCTCAAA GCAATGTCTG GTGACATCCC TGCCTCGTGT CTTCTCAGTG
  ACACTTACAT TCCCACCTTC CTGTCCTGCT CTGTCCCCAG CCCTACCAGC TCATCCCCTG
  R
  AACCATCCCA TGGTGATGTG AGGACAGCAG AGACCTCTCC TGTGTCTTGT ACCTGCATCT
  ATGGCCACCC AGTGTGTTTA CTCTGATTCA GTCTGCAGAG GTGCAGCGAC CACCAAAGCA
  AGGTCAGGGA CCTCTGACTC AACTATCTCA TGTCCTCCTC CTTTAATGTA TCGGAGACTT
  GATCTTTGGT TCCCTAGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767109	Ela1_AN6765_11	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811957					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580431 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	370 bp proximal
Rr301614	regulatory region 301614	1370 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	1286 bp upstream
Tssr136478	transcription start site region 136478	965 bp upstream
Tssr136479	transcription start site region 136479	631 bp upstream
Tssr136480	transcription start site region 136480	619 bp upstream
Tssr136481	transcription start site region 136481	599 bp upstream
Tssr136482	transcription start site region 136482	593 bp upstream
Tssr136483	transcription start site region 136483	576 bp upstream
Tssr136484	transcription start site region 136484	509 bp upstream
Tssr136485	transcription start site region 136485	479 bp upstream
Tssr136486	transcription start site region 136486	282 bp downstream
Tssr136487	transcription start site region 136487	370 bp downstream
Tssr136488	transcription start site region 136488	398 bp downstream
Tssr136489	transcription start site region 136489	430 bp downstream
Tssr136490	transcription start site region 136490	459 bp downstream
Tssr136491	transcription start site region 136491	752 bp downstream