rs16811958 SNP Detail

Summary

• ID
  rs16811958
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGCGCCAC CACCGCCCGG
  CAAAACAAAC TATTTTTAAG AAGAGCTTGT GAGGGATAAT GGAAACTTGA TCTGGCTTCT
  TGGAGTCCTC AAAGCAATGT CTGGTGACAT CCCTGCCTCG TGTCTTCTCA GTGACACTTA
  CATTCCCACC TTCCTGTCCT GCTCTGTCCC CAGCCCTACC AGCTCATCCC CTGGAACCAT
  S
  CCATGGTGAT GTGAGGACAG CAGAGACCTC TCCTGTGTCT TGTACCTGCA TCTATGGCCA
  CCCAGTGTGT TTACTCTGAT TCAGTCTGCA GAGGTGCAGC GACCACCAAA GCAAGGTCAG
  GGACCTCTGA CTCAACTATC TCATGTCCTC CTCCTTTAAT GTATCGGAGA CTTGATCTTT
  GGTTCCCTAG GTCATAGGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767110	Ela1_AN6765_12	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811958					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580438 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	363 bp proximal
Rr301614	regulatory region 301614	1363 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	1293 bp upstream
Tssr136478	transcription start site region 136478	972 bp upstream
Tssr136479	transcription start site region 136479	638 bp upstream
Tssr136480	transcription start site region 136480	626 bp upstream
Tssr136481	transcription start site region 136481	606 bp upstream
Tssr136482	transcription start site region 136482	600 bp upstream
Tssr136483	transcription start site region 136483	583 bp upstream
Tssr136484	transcription start site region 136484	516 bp upstream
Tssr136485	transcription start site region 136485	486 bp upstream
Tssr136486	transcription start site region 136486	275 bp downstream
Tssr136487	transcription start site region 136487	363 bp downstream
Tssr136488	transcription start site region 136488	391 bp downstream
Tssr136489	transcription start site region 136489	423 bp downstream
Tssr136490	transcription start site region 136490	452 bp downstream
Tssr136491	transcription start site region 136491	745 bp downstream