rs16811960 SNP Detail

Summary

• ID
  rs16811960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTCCCA CCTTCCTGTC
  CTGCTCTGTC CCCAGCCCTA CCAGCTCATC CCCTGGAACC ATCCCATGGT GATGTGAGGA
  CAGCAGAGAC CTCTCCTGTG TCTTGTACCT GCATCTATGG CCACCCAGTG TGTTTACTCT
  GATTCAGTCT GCAGAGGTGC AGCGACCACC AAAGCAAGGT CAGGGACCTC TGACTCAACT
  R
  TCTCATGTCC TCCTCCTTTA ATGTATCGGA GACTTGATCT TTGGTTCCCT AGGTCATAGG
  TCTCAGGCTA TACTGCCTAG GACCACAGAA GAAGATGCCC TAGACACCTA GCCATTTCAC
  CAAACTTCAG TGGTGGGGGG TGGGGGTGGG GGGTGTTGGG GGTGGGGGTG GGGGGAGTGT
  GGATGACTTA CTTCTGGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767112	Ela1_AN6765_14	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811960					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580576 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	225 bp proximal
Rr301614	regulatory region 301614	1225 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr133155	transcription start site region 133155	1883 bp upstream
Tssr133156	transcription start site region 133156	1914 bp upstream
Tssr133157	transcription start site region 133157	1930 bp upstream
Tssr136477	transcription start site region 136477	1431 bp upstream
Tssr136478	transcription start site region 136478	1110 bp upstream
Tssr136479	transcription start site region 136479	776 bp upstream
Tssr136480	transcription start site region 136480	764 bp upstream
Tssr136481	transcription start site region 136481	744 bp upstream
Tssr136482	transcription start site region 136482	738 bp upstream
Tssr136483	transcription start site region 136483	721 bp upstream
Tssr136484	transcription start site region 136484	654 bp upstream
Tssr136485	transcription start site region 136485	624 bp upstream
Tssr136486	transcription start site region 136486	137 bp downstream
Tssr136487	transcription start site region 136487	225 bp downstream
Tssr136488	transcription start site region 136488	253 bp downstream
Tssr136489	transcription start site region 136489	285 bp downstream
Tssr136490	transcription start site region 136490	314 bp downstream
Tssr136491	transcription start site region 136491	607 bp downstream
Tssr136492	transcription start site region 136492	1916 bp downstream