rs16811999 SNP Detail

Summary

• ID
  rs16811999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100578025 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTTG TTTTAAGAAT CAGAAGGATA
  R
  CATTTCAGCT GGGAGGCACA TGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767151	Ela1_AN6756_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16811999					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100578025 () rs orientation: reverse

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	905 bp upstream
Rr312498	regulatory region 312498	within coordinates
Tssr136475	transcription start site region 136475	1966 bp upstream
Tssr136476	transcription start site region 136476	1294 bp upstream
Tssr136477	transcription start site region 136477	1033 bp downstream
Tssr136478	transcription start site region 136478	1425 bp downstream
Tssr136479	transcription start site region 136479	1740 bp downstream
Tssr136480	transcription start site region 136480	1776 bp downstream
Tssr136481	transcription start site region 136481	1796 bp downstream
Tssr136482	transcription start site region 136482	1808 bp downstream
Tssr136483	transcription start site region 136483	1814 bp downstream
Tssr136484	transcription start site region 136484	1884 bp downstream
Tssr136485	transcription start site region 136485	1916 bp downstream