rs16812002 SNP Detail

Summary

• ID
  rs16812002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100577871 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGCT CAGAACAGCA AGGTTATCTT
  R
  GGCTACAAAG CCAGTTGCAA GGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767154	Ela1_AN6756_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
ss325083841	CHEV_15_100510421	CHEVERUD	SCREENING_POP	r	SNP														C						T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16812002					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100577871 () rs orientation: reverse

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	1059 bp upstream
Rr312498	regulatory region 312498	within coordinates
Tssr136473	transcription start site region 136473	1897 bp upstream
Tssr136474	transcription start site region 136474	1868 bp upstream
Tssr136475	transcription start site region 136475	1812 bp upstream
Tssr136476	transcription start site region 136476	1140 bp upstream
Tssr136477	transcription start site region 136477	1187 bp downstream
Tssr136478	transcription start site region 136478	1579 bp downstream
Tssr136479	transcription start site region 136479	1894 bp downstream
Tssr136480	transcription start site region 136480	1930 bp downstream
Tssr136481	transcription start site region 136481	1950 bp downstream
Tssr136482	transcription start site region 136482	1962 bp downstream
Tssr136483	transcription start site region 136483	1968 bp downstream