rs16812006 SNP Detail

Summary

• ID
  rs16812006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100577667 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                             TTTTT AAAANAAGGG AACCCCCCCG AGGAAACCCT
  TNNGGGTGNG AAGGCCCNGG GACTGCTCTT TTCCTTCAGC TAGGACNGAG CTGGGATCAG
  AAGCTCANGA GCCATATCCA GCCTACTGCC TGGTTNTGCA TGGACCATGA GCTACTGACG
  AAGGTTATAA CCTTTGGAAA TGGTTGTTGT TGTTATTGTT GTTTTAAGAA TCAGAAGGAT
  ANCATTtcag ctgggaggca catgacatag cataaagctc TTTTTAAAAN AAGGGAACCC
  CCCCGAGGAA ACCCTTNNGG GTGNGAAGGC CCNGGGACTG CTCTTTTCCT TCAGCTAGGA
  CNGAGCTGGG ATCAGAAGCT CANGAGCCAT ATCCAGCCTA CTGCCTGGTT NTGCATGGAC
  CATGAGCTAC TGACGAAGGT TATAACCTTT GGAAATGGTT GTTGTTGTTA TTGTTGTTTT
  AAGAATCAGA AGGATANCAT Ttcagctggg aggcacatga catagcataa agctcATTCT
  GACCCCAAGG AAAATTGCAG AGTAATGANA GAGGAGTGGG TTGTTGGGGA AGNTCCACAA
  R
  AANATAAANG CTTGANTTCT TCNGGGCNGG GGGNAAAAAA AAAAACTTCC CCAAACCCAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	LP/J	MRL/MpJ
ss24767158	Ela1_AN6756_10	ROCHEBIO	RPAMM	f	SNP	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	LP/J	MRL/MpJ
rs16812006					SNP	G	G	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100577667 () rs orientation: reverse

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	1263 bp upstream
Rr509797	regulatory region 509797	935 bp distal
Rr509798	regulatory region 509798	230 bp distal
Tssr136473	transcription start site region 136473	1693 bp upstream
Tssr136474	transcription start site region 136474	1664 bp upstream
Tssr136475	transcription start site region 136475	1608 bp upstream
Tssr136476	transcription start site region 136476	936 bp upstream
Tssr136477	transcription start site region 136477	1391 bp downstream
Tssr136478	transcription start site region 136478	1783 bp downstream