rs16812007 SNP Detail

Summary

• ID
  rs16812007
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100577664 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                          TTTTTAAA ANAAGGGAAC CCCCCCGAGG AAACCCTTNN
  GGGTGNGAAG GCCCNGGGAC TGCTCTTTTC CTTCAGCTAG GACNGAGCTG GGATCAGAAG
  CTCANGAGCC ATATCCAGCC TACTGCCTGG TTNTGCATGG ACCATGAGCT ACTGACGAAG
  GTTATAACCT TTGGAAATGG TTGTTGTTGT TATTGTTGTT TTAAGAATCA GAAGGATANC
  ATTtcagctg ggaggcacat gacatagcat aaagctcTTT TTAAAANAAG GGAACCCCCC
  CGAGGAAACC CTTNNGGGTG NGAAGGCCCN GGGACTGCTC TTTTCCTTCA GCTAGGACNG
  AGCTGGGATC AGAAGCTCAN GAGCCATATC CAGCCTACTG CCTGGTTNTG CATGGACCAT
  GAGCTACTGA CGAAGGTTAT AACCTTTGGA AATGGTTGTT GTTGTTATTG TTGTTTTAAG
  AATCAGAAGG ATANCATTtc agctgggagg cacatgacat agcataaagc tcATTCTGAC
  CCCAAGGAAA ATTGCAGAGT AATGANAGAG GAGTGGGTTG TTGGGGAAGN TCCACAANAA
  M
  ATAAANGCTT GANTTCTTCN GGGCNGGGGG NAAAAAAAAA AACTTCCCCA AACCCAA   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	CAST/EiJ	LG/J	NZB/BlNJ
ss24767159	Ela1_AN6756_11	ROCHEBIO	RPAMM	f	SNP	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	CAST/EiJ	LG/J	NZB/BlNJ
rs16812007					SNP	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100577664 () rs orientation: reverse

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	1266 bp upstream
Rr509797	regulatory region 509797	932 bp distal
Rr509798	regulatory region 509798	227 bp distal
Tssr136473	transcription start site region 136473	1690 bp upstream
Tssr136474	transcription start site region 136474	1661 bp upstream
Tssr136475	transcription start site region 136475	1605 bp upstream
Tssr136476	transcription start site region 136476	933 bp upstream
Tssr136477	transcription start site region 136477	1394 bp downstream
Tssr136478	transcription start site region 136478	1786 bp downstream