rs16812016 SNP Detail

Summary

• ID
  rs16812016
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100578983 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GATGTCCCAT TCAGCCAATG
  GGGAGCTGGC CCAGACCCTG CAGCAGGCAT ACCTGCCCAG CGTGTCCTAT AGCATCTGCT
  CCAGCTCCTC TTACTGGGGC TCCTCTGTGA AGAATACCAT GGTGTGCGCT GGTGGAGATG
  GAGTCCGCTC TGGATGCCAG GTAAGTGTAT GCAGGGGTGA GCCCCAGGGG CCTCCACTGG
  W
  CACCCCGCCT TTTACACTCT GTCTGTTCCT CACCTGCTCT TGTGCCGGTG GACAGACTCA
  GCTTCCTACT CTATCACAGA ACCTCCAAGT GGGAGGGGAC ATGAGAGTTC CTCGCTCAAT
  ATCAGTATTT CAAAAGCTGC AGTGTGTCCT AGCCTGCCTG TACCTCCTTG TGTATTTTTT
  AGTAGTTGCT TGTGACCTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767168	Ela1_AN6757_8	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16812016					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100578983 () rs orientation: reverse

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	1818 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	75 bp downstream
Tssr136478	transcription start site region 136478	467 bp downstream
Tssr136479	transcription start site region 136479	782 bp downstream
Tssr136480	transcription start site region 136480	818 bp downstream
Tssr136481	transcription start site region 136481	838 bp downstream
Tssr136482	transcription start site region 136482	850 bp downstream
Tssr136483	transcription start site region 136483	856 bp downstream
Tssr136484	transcription start site region 136484	926 bp downstream
Tssr136485	transcription start site region 136485	958 bp downstream
Tssr136486	transcription start site region 136486	1730 bp downstream
Tssr136487	transcription start site region 136487	1818 bp downstream
Tssr136488	transcription start site region 136488	1846 bp downstream
Tssr136489	transcription start site region 136489	1878 bp downstream
Tssr136490	transcription start site region 136490	1907 bp downstream