rs16812020 SNP Detail

Summary

• ID
  rs16812020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100578940 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTGT CTGTTCCTCA CCTGCTCTTG
  Y
  GCCGGTGGAC AGACTCAGCT TCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767172	Ela1_AN6757_12	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16812020					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100578940 () rs orientation: reverse

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	1861 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	118 bp downstream
Tssr136478	transcription start site region 136478	510 bp downstream
Tssr136479	transcription start site region 136479	825 bp downstream
Tssr136480	transcription start site region 136480	861 bp downstream
Tssr136481	transcription start site region 136481	881 bp downstream
Tssr136482	transcription start site region 136482	893 bp downstream
Tssr136483	transcription start site region 136483	899 bp downstream
Tssr136484	transcription start site region 136484	969 bp downstream
Tssr136485	transcription start site region 136485	1001 bp downstream
Tssr136486	transcription start site region 136486	1773 bp downstream
Tssr136487	transcription start site region 136487	1861 bp downstream
Tssr136488	transcription start site region 136488	1889 bp downstream
Tssr136489	transcription start site region 136489	1921 bp downstream
Tssr136490	transcription start site region 136490	1950 bp downstream