rs16812022 SNP Detail

Summary

• ID
  rs16812022
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100578929 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCAC CTGCTCTTGT GCCGGTGGAC
  M
  GACTCAGCTT CCTACTCTAT CACAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767174	Ela1_AN6757_14	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16812022					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100578929 () rs orientation: reverse

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	1 bp upstream
Rr301613	regulatory region 301613	1872 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	129 bp downstream
Tssr136478	transcription start site region 136478	521 bp downstream
Tssr136479	transcription start site region 136479	836 bp downstream
Tssr136480	transcription start site region 136480	872 bp downstream
Tssr136481	transcription start site region 136481	892 bp downstream
Tssr136482	transcription start site region 136482	904 bp downstream
Tssr136483	transcription start site region 136483	910 bp downstream
Tssr136484	transcription start site region 136484	980 bp downstream
Tssr136485	transcription start site region 136485	1012 bp downstream
Tssr136486	transcription start site region 136486	1784 bp downstream
Tssr136487	transcription start site region 136487	1872 bp downstream
Tssr136488	transcription start site region 136488	1900 bp downstream
Tssr136489	transcription start site region 136489	1932 bp downstream
Tssr136490	transcription start site region 136490	1961 bp downstream