rs16812115 SNP Detail

Summary

• ID
  rs16812115
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100577384 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCTGGGTGGA AGAGAGAAAA
  CATACCCAGA CCCAAGAAAG GNCGGTAACA GGCANTAAGG ACTTGCAAAA CCTGAGGAAG
  ACCCGCAGGT CATCCCATAG CCGGNGNTTT TGATGAACGA GCTCTGTGGC TANNAAGTGG
  CTAATCTGGT NACTGTCGTG GCAAGGATGT CTGTAGAAGG TGGGGACAGT CACACAAGGG
  CAGGTAAGNG TAAGAAGNCA TTTGTCAGGN NCCCTTGGAT GNGGGGNAGA GGTACATANA
  M
  AATCTGGTGA CATTAGAAAC AGAAGTCACA GACAGNTGGG TCTTTAATGG GGAAGAAAAT
  CCAGGGTAAC AATAGGCAGA GAAGATTTAT TGGAGGGNGA AGAGGGCNGA TAATGGATGG
  ACCATGATCC TAGTAAANAA GGGAGAGCTG GAAGCCAGAG GCCAGCCAGN TGGACACGGC
  TTTAACTGGG GGTGGGGGAC GATGGGGGTG TTCCCTNACC GCGGGCAGGT TTGCNAACTG
  GGCAGCCNCA AGTTGGCAGG TGTTCTATTT TATTGCTTCT GGTTACTCAT GAACTAGGAA
  ATCAACTTGA CTGCAAAAAA AAAGGAAAGT GCAAAGTTTG TGCAAGA              
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24767269	Ela1_AN6755_15	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16812115					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100577384 () rs orientation: reverse

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	1546 bp upstream
Rr509797	regulatory region 509797	652 bp distal
Rr509798	regulatory region 509798	within coordinates
Tssr136473	transcription start site region 136473	1410 bp upstream
Tssr136474	transcription start site region 136474	1381 bp upstream
Tssr136475	transcription start site region 136475	1325 bp upstream
Tssr136476	transcription start site region 136476	653 bp upstream
Tssr136477	transcription start site region 136477	1674 bp downstream