rs16815572 SNP Detail

Summary

• ID
  rs16815572
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137548862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATACAGG AGGCCTGGCC
  TTGCTTTCCT TCCCAACAGG ACACAGCCTG CTGCACTGCA CATAATGGCC CTGGTGCCCC
  ACAGGGTGGG GAGGTGCCTC AGTCAGTAAA GTCCTTGCTG AGCAAGCATG GGGACTTTCG
  TTAGGCCCCC AAAATCAGCA TTTTAAAATC CAGGCAGGAG CTGGATAGAC GGCTCAGTAA
  S
  TAGGAGCACT GACCACTTCT ATAGAGGACC CAATTTTGGT TCCCAGCAAC AAGACGCTTA
  TTTCGGTTCA TAATAACCTA TAACTGCAGT TCTAGGTGAT CCAATGCCCT CTTCTAGCCT
  CTGAGGGCAC CAGGCATGCT TGTGGTGCAC AGACATGTGT GAGTGCAGGG GAACCGCTCA
  TACGCTTCTA AATAAACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24770924	Eps8_AN7014_4	ROCHEBIO	RPAMM	f	SNP	G		C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C
ss133873290	ENSMUSSNP4966980	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		C									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16815572					SNP	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137548862 () rs orientation: forward

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640223	regulatory region 640223	1989 bp distal
Rr640224	regulatory region 640224	858 bp distal
Rr640225	regulatory region 640225	357 bp distal
Rr640226	regulatory region 640226	518 bp distal
Tssr63894	transcription start site region 63894	1104 bp upstream
Tssr63895	transcription start site region 63895	1056 bp upstream
Tssr63896	transcription start site region 63896	1033 bp upstream
Tssr63897	transcription start site region 63897	832 bp upstream
Tssr63898	transcription start site region 63898	810 bp upstream