rs16815574 SNP Detail

Summary

• ID
  rs16815574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137548876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTTGC TTTCCTTCCC
  AACAGGACAC AGCCTGCTGC ACTGCACATA ATGGCCCTGG TGCCCCACAG GGTGGGGAGG
  TGCCTCAGTC AGTAAAGTCC TTGCTGAGCA AGCATGGGGA CTTTCGTTAG GCCCCCAAAA
  TCAGCATTTT AAAATCCAGG CAGGAGCTGG ATAGACGGCT CAGTAACTAG GAGCACTGAC
  Y
  ACTTCTATAG AGGACCCAAT TTTGGTTCCC AGCAACAAGA CGCTTATTTC GGTTCATAAT
  AACCTATAAC TGCAGTTCTA GGTGATCCAA TGCCCTCTTC TAGCCTCTGA GGGCACCAGG
  CATGCTTGTG GTGCACAGAC ATGTGTGAGT GCAGGGGAAC CGCTCATACG CTTCTAAATA
  AACACATAAA TAAAGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24770926	Eps8_AN7014_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16815574					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137548876 () rs orientation: forward

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640224	regulatory region 640224	872 bp distal
Rr640225	regulatory region 640225	371 bp distal
Rr640226	regulatory region 640226	532 bp distal
Tssr63894	transcription start site region 63894	1118 bp upstream
Tssr63895	transcription start site region 63895	1070 bp upstream
Tssr63896	transcription start site region 63896	1047 bp upstream
Tssr63897	transcription start site region 63897	846 bp upstream
Tssr63898	transcription start site region 63898	824 bp upstream