rs16815575 SNP Detail

Summary

• ID
  rs16815575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137548881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTTTCC TTCCCAACAG
  GACACAGCCT GCTGCACTGC ACATAATGGC CCTGGTGCCC CACAGGGTGG GGAGGTGCCT
  CAGTCAGTAA AGTCCTTGCT GAGCAAGCAT GGGGACTTTC GTTAGGCCCC CAAAATCAGC
  ATTTTAAAAT CCAGGCAGGA GCTGGATAGA CGGCTCAGTA ACTAGGAGCA CTGACCACTT
  Y
  TATAGAGGAC CCAATTTTGG TTCCCAGCAA CAAGACGCTT ATTTCGGTTC ATAATAACCT
  ATAACTGCAG TTCTAGGTGA TCCAATGCCC TCTTCTAGCC TCTGAGGGCA CCAGGCATGC
  TTGTGGTGCA CAGACATGTG TGAGTGCAGG GGAACCGCTC ATACGCTTCT AAATAAACAC
  ATAAATAAAG AAACCTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24770927	Eps8_AN7014_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16815575					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137548881 () rs orientation: forward

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640224	regulatory region 640224	877 bp distal
Rr640225	regulatory region 640225	376 bp distal
Rr640226	regulatory region 640226	537 bp distal
Tssr63894	transcription start site region 63894	1123 bp upstream
Tssr63895	transcription start site region 63895	1075 bp upstream
Tssr63896	transcription start site region 63896	1052 bp upstream
Tssr63897	transcription start site region 63897	851 bp upstream
Tssr63898	transcription start site region 63898	829 bp upstream