rs16815580 SNP Detail

Summary

• ID
  rs16815580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137548982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                       G GGGGATTTCG
  TTAAGCCCCC AAAATCAGCA TTTTAAAANC CAGGCAggag ctggatagac nnntcagtaa
  ntagnagcac tgacnacttn tatagaggac ccaattttgg ttcccagcaa caagacgctt
  atttnggttn ntaataacct ntaactgcag ttctaggtga tccaatgccc tcttctagcc
  Y
  ctgagggcac caggnnnnnn nnnnntgcac agacatgtgt gtgtgcaggg gaaccnctca
  tacncttcta aataaacaca taaataaaGA AACCTTTTTT GTTTGTTTGT TTGTCTTGaa
  agccaggtat gagaatatnt acctgtaact ccagcatgag gcaactgaac aggngcatcc
  ttgggggtcc aggngtcacc ctngccaaat cagctccatc cagacctgtg agagactctg
  cctcggaaaa ttcagtgact ctcaaccaag gagcgtcanc ctgngttacn nnncctatgg
  cttccacaca tggagatgca cacaGATGTC CTCACACAAA CACACATATG CACAGAAAAT
  AAAAATATAA AAGATAATAA GTAAATACAT CAATAGGTTT GTATGGCATA TGAGATACAA
  AGTTGGTGCT AAG                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24770932	Eps8_AN7014_12	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16815580					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137548982 () rs orientation: forward

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640224	regulatory region 640224	978 bp distal
Rr640225	regulatory region 640225	477 bp distal
Rr640226	regulatory region 640226	638 bp distal
Tssr63894	transcription start site region 63894	1224 bp upstream
Tssr63895	transcription start site region 63895	1176 bp upstream
Tssr63896	transcription start site region 63896	1153 bp upstream
Tssr63897	transcription start site region 63897	952 bp upstream
Tssr63898	transcription start site region 63898	930 bp upstream