rs16817335 SNP Detail

Summary

• ID
  rs16817335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42459288 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             TGGAAGGACA GAGATGGAGA CACGGAAATG GTCTTCCTAC GGAGCAACGA
  Y
  GGCGAACTTC CCCTCGTTCC CCATGCTTGG TACTGCTTCC AATCTCTCCC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24772715	Nr2e1_JC10001_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16817335					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42459288 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1484	CpG island 1484	within coordinates
Gm38491	predicted gene, 38491	500 bp upstream
Nr2e1	nuclear receptor subfamily 2, group E, member 1	within coordinates
Rr430584	regulatory region 430584	within coordinates
Rr430585	regulatory region 430585	330 bp proximal
Rr430586	regulatory region 430586	554 bp proximal
Tssr93098	transcription start site region 93098	495 bp upstream
Tssr97447	transcription start site region 97447	287 bp downstream
Tssr97448	transcription start site region 97448	312 bp downstream
Tssr97449	transcription start site region 97449	336 bp downstream
Tssr97450	transcription start site region 97450	354 bp downstream