rs16817592 SNP Detail

Summary

• ID
  rs16817592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69195496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCAGGCT GGAGCTAATG
  GATTTGGTTG TTTTCAAAGC ATTCTTATCT ACAGCAAGAT ACTGTTTTAA AGTGAATCCT
  CAGCTTGTCT ATCAAGAGGC ACTTGCACTG GGCAGAACAC ATGAACATGT GCTCTGTAGT
  TGTATTCTCC TCCTTTAACA ATACAAAGAA GGGGAGGGAA AAAAATGCAC CCAGCACCCA
  R
  TGGTGGGCTA TTTTGGTGGC ACTCTTCTTT TTACATGACT AACACAAGGG AAACCCAAAA
  CCAAATTTGA AGACTGGGGC GTTGCCTCAT TGGGAGATGG AGTTGCATCA TGGGAACATG
  GTGTGATTTA ATTTCATAAT TGTAAACATT ACAGTGGGTA TGGCTGATTT CCTCTGTAAC
  CCTTGTCCAC TTCACTATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24772992	Rora_JC9826_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16817592					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69195496 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21987	CpG island 21987			1097 bp proximal
Rora	RAR-related orphan receptor alpha			Intron
				mRNA-UTR
Rr682144	regulatory region 682144			978 bp proximal
Rr682145	regulatory region 682145			1479 bp proximal
Tssr85839	transcription start site region 85839			165 bp upstream
Tssr85840	transcription start site region 85840			1627 bp upstream
Tssr85841	transcription start site region 85841			1651 bp upstream
Tssr85842	transcription start site region 85842			1688 bp upstream
Tssr85843	transcription start site region 85843			1695 bp upstream