rs16817593 SNP Detail

Summary

• ID
  rs16817593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69195497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGGCTG GAGCTAATGG
  ATTTGGTTGT TTTCAAAGCA TTCTTATCTA CAGCAAGATA CTGTTTTAAA GTGAATCCTC
  AGCTTGTCTA TCAAGAGGCA CTTGCACTGG GCAGAACACA TGAACATGTG CTCTGTAGTT
  GTATTCTCCT CCTTTAACAA TACAAAGAAG GGGAGGGAAA AAAATGCACC CAGCACCCAG
  Y
  GGTGGGCTAT TTTGGTGGCA CTCTTCTTTT TACATGACTA ACACAAGGGA AACCCAAAAC
  CAAATTTGAA GACTGGGGCG TTGCCTCATT GGGAGATGGA GTTGCATCAT GGGAACATGG
  TGTGATTTAA TTTCATAATT GTAAACATTA CAGTGGGTAT GGCTGATTTC CTCTGTAACC
  CTTGTCCACT TCACTATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24772993	Rora_JC9826_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16817593					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69195497 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21987	CpG island 21987			1096 bp proximal
Rora	RAR-related orphan receptor alpha			Intron
				mRNA-UTR
Rr682144	regulatory region 682144			977 bp proximal
Rr682145	regulatory region 682145			1478 bp proximal
Tssr85839	transcription start site region 85839			164 bp upstream
Tssr85840	transcription start site region 85840			1626 bp upstream
Tssr85841	transcription start site region 85841			1650 bp upstream
Tssr85842	transcription start site region 85842			1687 bp upstream
Tssr85843	transcription start site region 85843			1694 bp upstream