rs16817595 SNP Detail

Summary

• ID
  rs16817595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69196425 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGGCTGCGTA CTCCCGCAGC
  ATCCCGCATT CAAGACAGCC TGTATATGTA AGACTGGAAA ACCATGTCTG CCTGCTAAAT
  GAGCTCCAGG TGCCAGACAA TTTGAGCCAC TGGTCCCCAG GCTCATCCTA TCTAGAAGTC
  TCTCCAGAAA ACCCATCTCC AAGTGGAAAG GGCGCTAGTT TTCTAACCTC AAAGATAAGA
  S
  GTGGCATTTT AAACAGAAGA AACAACAAAC AACACCGGTA GCCATACCAT TCACCTTACA
  ACCGAGATTT AATTCCCTCC AATGTTTGAA ACTTTTTACT GCATTTACGT AAATCATGGT
  TTTATTTTTG TTCCCAGATG AATCTCTTTA TGCTGAATTT CAAGACTACT TACCAGGCTT
  CCGCTTTACT TAAAACGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J
ss24772995	Rora_JC9827_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	G	G	C	C		C	C	C	C	G	C	C	G	C	C	C		C
ss61417125	NES16801208	PERLEGEN	MM_PANEL2	r	SNP								G			G									G		C
ss322997867	CHEV_9_69136950	CHEVERUD	SCREENING_POP	r	SNP													C										G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J
rs16817595					SNP	C	C	C	G	G	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61417125	NES16801208	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69196425 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21987	CpG island 21987			168 bp proximal
Rora	RAR-related orphan receptor alpha			Intron
				mRNA-UTR
Rr682144	regulatory region 682144			49 bp proximal
Rr682145	regulatory region 682145			550 bp proximal
Tssr85839	transcription start site region 85839			739 bp downstream
Tssr85840	transcription start site region 85840			698 bp upstream
Tssr85841	transcription start site region 85841			722 bp upstream
Tssr85842	transcription start site region 85842			759 bp upstream
Tssr85843	transcription start site region 85843			766 bp upstream