rs16817596 SNP Detail

Summary

• ID
  rs16817596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69196344 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTACA ACCGAGATTT AATTCCCTCC
  R
  ATGTTTGAAA CTTTTTACTG CATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24772996	Rora_JC9827_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	G	G	A	A	A	A	G	A	G	A	G	G	G	G	G	A		A
ss322997866	CHEV_9_69136869	CHEVERUD	SCREENING_POP	r	SNP												C								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16817596					SNP	A	A	A	G	G	A	A	A	A	G	A	G	A	G	G	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69196344 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21987	CpG island 21987			249 bp proximal
Rora	RAR-related orphan receptor alpha			Intron
				mRNA-UTR
Rr682144	regulatory region 682144			130 bp proximal
Rr682145	regulatory region 682145			631 bp proximal
Tssr85839	transcription start site region 85839			658 bp downstream
Tssr85840	transcription start site region 85840			779 bp upstream
Tssr85841	transcription start site region 85841			803 bp upstream
Tssr85842	transcription start site region 85842			840 bp upstream
Tssr85843	transcription start site region 85843			847 bp upstream