rs16817686 SNP Detail

Summary

• ID
  rs16817686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69282344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCGATC CTGTTCATTC
  AAACCAAGGG TTCTGAAGTC AGACAACTTG GCTTCCAATG TCAAGTTGTG ACCATAGGTA
  CATTACTTAT CTGTTAAGTC TCTGTTTCCT GAGCCCTAAA ATGGGAATGT TAACCATATG
  CCCCTCACGG CGCTGTTTTG AAGCCTGAGG AAACTCTTAA GATCATTGTT CAAGCAATTA
  Y
  CTGCCCAGGA ACTACATGAT GGGGAGAGGG TCCTGATGTG CAGCTGACAG TGGTGGCTAA
  GAAACTACTG ATGGCGCTAA GGATGATGGT GATGCTGATA ATACCTTGTG GTGATTGTGA
  CAGGGATACC GGTACCAGAA GATGTTACTA GCAATGGTGA TGTTGGCTAA GCCAATTTCC
  CTCTTAATGC TTCAAAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24773105	Rora_JC9843_5	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16817686					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69282344 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates