rs16817687 SNP Detail

Summary

• ID
  rs16817687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69282425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTTATC TGTTAAGTCT
  CTGTTTCCTG AGCCCTAAAA TGGGAATGTT AACCATATGC CCCTCACGGC GCTGTTTTGA
  AGCCTGAGGA AACTCTTAAG ATCATTGTTC AAGCAATTAT CTGCCCAGGA ACTACATGAT
  GGGGAGAGGG TCCTGATGTG CAGCTGACAG TGGTGGCTAA GAAACTACTG ATGGCGCTAA
  R
  GATGATGGTG ATGCTGATAA TACCTTGTGG TGATTGTGAC AGGGATACCG GTACCAGAAG
  ATGTTACTAG CAATGGTGAT GTTGGCTAAG CCAATTTCCC TCTTAATGCT TCAAAAGTCA
  ACTAAGAAAC ACTCTTACTC TTCCAGCTTA TCTCCAACTT CCACATCTCT CTTCACCTTG
  TCCTGTCTTC TTCCCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	MSM	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24773106	Rora_JC9843_6	ROCHEBIO	RPAMM	f	SNP	A			G	G	G	G	G	G		G	G		G	G	G			G	A	G		G	G		G	G		G		A	G
ss46298202	mCV27574609	ABI	CRAMUS_MOUSE	f	SNP			A		G								G		G
ss61416536	NES16802765	PERLEGEN	MM_PANEL2	f	SNP		A			G	G		G		A		G		G	G		G	G				G			G			G		G			G
ss136600604	ENSMUSSNP2309561	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G										G
ss322998164	CHEV_9_69222950	CHEVERUD	SCREENING_POP	f	SNP																			G												A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	MSM	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16817687					SNP	A	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61416536	NES16802765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69282425 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates