rs16817689 SNP Detail

Summary

• ID
  rs16817689
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69282460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATGGGA ATGTTAACCA
  TATGCCCCTC ACGGCGCTGT TTTGAAGCCT GAGGAAACTC TTAAGATCAT TGTTCAAGCA
  ATTATCTGCC CAGGAACTAC ATGATGGGGA GAGGGTCCTG ATGTGCAGCT GACAGTGGTG
  GCTAAGAAAC TACTGATGGC GCTAAGGATG ATGGTGATGC TGATAATACC TTGTGGTGAT
  K
  GTGACAGGGA TACCGGTACC AGAAGATGTT ACTAGCAATG GTGATGTTGG CTAAGCCAAT
  TTCCCTCTTA ATGCTTCAAA AGTCAACTAA GAAACACTCT TACTCTTCCA GCTTATCTCC
  AACTTCCACA TCTCTCTTCA CCTTGTCCTG TCTTCTTCCC CTGGGGTAAC CACCAACATC
  CTAAACTGCC TTTATTTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	MSM	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24773108	Rora_JC9843_8	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T		T	T	G	T	T			T	T	T		T	T		T	T	T		T	G
ss61416535	NES16802768	PERLEGEN	MM_PANEL2	f	SNP		T		T	T		T		T		T	G	T		T	T				T			T				T			T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	MSM	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16817689					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61416535	NES16802768	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69282460 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates