rs16817699 SNP Detail

Summary

• ID
  rs16817699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69282634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                  GGTTC TGAAGTCAGA CAACTTGGCT TCCAATGTCA AGTNGTGANC
  ATAGGTACAT TACTTATCTG TTAAGTCTCN GTTTCCTGAG CCCTAAAATG GGAATGTTAA
  CCATATGCCC CTCACGGNGC TGTNTTGAAG CCNGAGGAAA CTCTTAAGAT CATTGTTCAA
  GCAATTANCT GCCCAGGAAC TACATGATGG GGAGAGGGTC CTGATGTGCA GCTGACAGTG
  GTGGCTAAGA AACTACTGAT GGCGCTAANG ATGATGGTGA TGCTGATAAT ACCTTGTGGT
  GANNGTGACA GGGATANCGG TACCAGAAGA TGTTACTAGC ANTGGTGATG TTGGCTAAGC
  CAATTTNNCT CTTAATGCTT CAAANNAGTC AACTAAGAAA NNCTCTTACT CTTCCAGCTT
  ATCTCCAACT TCCACATCTC TCTTCACCTT GTCCTGTCTT CTTCCCCTGG GGTAACCNAC
  Y
  NACATCCTAA ACTGCCTTTA TTTTAATCCT AGGTTGTGAA GACTTCATCA GCTTTGTGTT
  TGAATTTGGG AAGAGTTTGT GTTCTATGCA CCTGACCGAA GACGAAATCG CGTTATTTTC
  TGCATTCGTA CTGATGTCAG CGGGTAAGGG AA                              
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24773118	Rora_JC9843_18	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16817699					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69282634 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682167	regulatory region 682167	1811 bp proximal