rs16817700 SNP Detail

Summary

• ID
  rs16817700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69282635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTGATA ATACCTTGTG
  GTGATTGTGA CAGGGATACC GGTACCAGAA GATGTTACTA GCAATGGTGA TGTTGGCTAA
  GCCAATTTCC CTCTTAATGC TTCAAAAGTC AACTAAGAAA CACTCTTACT CTTCCAGCTT
  ATCTCCAACT TCCACATCTC TCTTCACCTT GTCCTGTCTT CTTCCCCTGG GGTAACCACC
  R
  ACATCCTAAA CTGCCTTTAT TTTAATCCTA GGTTGTGAAG ACTTCATCAG CTTTGTGTTT
  GAATTTGGGA AGAGTTTGTG TTCTATGCAC CTGACCGAAG ACGAAATCGC GTTATTTTCT
  GCATTCGTAC TGATGTCAGC GGGTAAGGGA ATCAAACAGA AGTAGAACAG TTTCTGACTC
  ATCCAGGTGC AGAGTGTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	MSM	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24773119	Rora_JC9843_19	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	A	A	A		A	A	G	A	A			A	A	G		A	G		G	G		A		A	G
ss61416532	NES16802772	PERLEGEN	MM_PANEL2	f	SNP		A		A	A		A		A		A	A	A		A	A				G			A			A		A			A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	MSM	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16817700					SNP	A	A	A	A	A	A	A	A	A	A	A	?	A	A	A	A	A	A	G	G	A	G	A	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61416532	NES16802772	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69282635 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates