rs16817701 SNP Detail

Summary

• ID
  rs16817701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69282802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCCTGT CTTCTTCCCC
  TGGGGTAACC ACCAACATCC TAAACTGCCT TTATTTTAAT CCTAGGTTGT GAAGACTTCA
  TCAGCTTTGT GTTTGAATTT GGGAAGAGTT TGTGTTCTAT GCACCTGACC GAAGACGAAA
  TCGCGTTATT TTCTGCATTC GTACTGATGT CAGCGGGTAA GGGAATCAAA CAGAAGTAGA
  R
  CAGTTTCTGA CTCATCCAGG TGCAGAGTGT ATTCAGGAGG CACAGGACTT TTCCATGTTG
  TACGACATTG GCGGGGCTCC CAAGAGCAGC TGCCACCCTT ATTAAATTTA AAGTTTTCCA
  AAGTATAACC ACCACCACCC CCCAACACAC AAATCTTTTC TAAAGACCTT ATGGGAGTGA
  AAAGATGGCT CAGCGGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	PERA	SPRET/EiJ
ss24773120	Rora_JC9844_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	PERA	SPRET/EiJ
rs16817701					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69282802 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682167	regulatory region 682167	1643 bp proximal