rs16817703 SNP Detail

Summary

• ID
  rs16817703
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69282874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTCATC AGCTTTGTGT
  TTGAATTTGG GAAGAGTTTG TGTTCTATGC ACCTGACCGA AGACGAAATC GCGTTATTTT
  CTGCATTCGT ACTGATGTCA GCGGGTAAGG GAATCAAACA GAAGTAGAAC AGTTTCTGAC
  TCATCCAGGT GCAGAGTGTA TTCAGGAGGC ACAGGACTTT TCCATGTTGT ACGACATTGG
  M
  GGGGCTCCCA AGAGCAGCTG CCACCCTTAT TAAATTTAAA GTTTTCCAAA GTATAACCAC
  CACCACCCCC CAACACACAA ATCTTTTCTA AAGACCTTAT GGGAGTGAAA AGATGGCTCA
  GCGGCAAGAG CACATGAGGA CCTGAGCTCG AATCTCAGCA CCCATGTTAA AAAAAAGAAA
  GAAAGAGAGA AAGAGAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	PERA	SPRET/EiJ
ss24773122	Rora_JC9844_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	PERA	SPRET/EiJ
rs16817703					SNP	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69282874 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682167	regulatory region 682167	1571 bp proximal