rs16817739 SNP Detail

Summary

• ID
  rs16817739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69284529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTATAAT TGATCCCAGA
  GTTTCCTGCA GTAATGCAGC AGTCGGGGAA AACAGCCTTT TATTACCTGT TAATTACATG
  TGTAAAGAGG GGTGCATGCA TATGCAAGTG TTCACAGAGA CCAGAAGAGG GTGCTAGATC
  CTCTGGAATT GAAGCCATAG GCAGTTGTGA GCTGCCAAAT TTGTGAGCTG GAAACCAAAC
  Y
  CTGATCCTCT GCAAGGACAC TGTTGCTCTA AATTGCTGAG CCATTTCTCC AGCCACCCAA
  AACGCTTTCT CTTCTTTCTT TTTTGTTTTT TTGTTTTTTT AAATAACTAA TTCTCTCAGG
  AACCTCTTCC TGTTCTTAAA CTTAAGTATA AAAAAGGATC AACATGCCAC ACTAACTAAA
  GATAAGCAGG CATATCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24773160	Rora_JC9846_24	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16817739					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69284529 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682167	regulatory region 682167	63 bp distal