rs16818442 SNP Detail

Summary

• ID
  rs16818442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55565001 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACTGC ACTGTACTGA CTGCGCTACA
  Y
  TCCCCGTCCT TACACCCATC TTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss24773934	F12_AN7148_2	ROCHEBIO	RPAMM	f	SNP		T	T	C	C	T	T		C	T	C		C	C			T		C		C	C			C
ss61806177	NES17743063	PERLEGEN	MM_PANEL2	r	SNP	G		A	G		A		A		A		G	G		G	G		G		G			G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs16818442					SNP	C	T	T	C	C	T	T	T	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806177	NES17743063	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55565001 () rs orientation: reverse

Symbol	Name	Function Class
BC038268	cDNA sequence BC038268	1596 bp downstream
Cpgi5668	CpG island 5668	1847 bp distal
Cpgi5669	CpG island 5669	1042 bp proximal
F12	coagulation factor XII (Hageman factor)	770 bp downstream
Pfn3	profilin 3	1956 bp upstream
Rr480459	regulatory region 480459	1625 bp distal
Rr480460	regulatory region 480460	1274 bp proximal
Tssr122694	transcription start site region 122694	1937 bp upstream