rs16818443 SNP Detail

Summary

• ID
  rs16818443
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:55565837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTAAGG ATGAGAAAAT
  ATGGTGGTCC GGACAAGAGT CTACGCCTCT TATGCTGACA TCTGGCTAGT TGCCTTGTCC
  AGGCAACGAG GGAGTTGGCT TACCTGTGCT CCCACTTGAC GTTTCAAGAC AGAATTCTGA
  GGAACGTTTT CAAAGCACTT TATTGAGTTT CTGTGCCCCC AGTGTCGGGG CACTAGCTTC
  M
  CTGTGACCCA GCATGCCACA TTCATCGTCC CATCCCAAGG AGCACACAAG GAGGGAAGGA
  TAAAGCCTGG TTAGTTATGA AGCAATATGC TTCTGGATCC AAGCCAGGTA GTTGGCCACG
  TCTGTGTAGA CTCCGGGCTT GTTGCGGTCA CCACAGCCGG AGCCCCAGCT GATGACTCCG
  CGCAGGGTGA GCTGATGTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss24773935	F12_AN7149_1	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	A	A	A		A	A	A	C	A	A				A		A	A			A
ss61806171	NES17743028	PERLEGEN	MM_PANEL2	f	SNP		A		A	A		A		A		A		C	A		A	A	C		A			A	A		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs16818443					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806171	NES17743028	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55565837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5669	CpG island 5669	206 bp proximal
F12	coagulation factor XII (Hageman factor)	mRNA-UTR
Rr480460	regulatory region 480460	438 bp proximal