rs16818452 SNP Detail

Summary

• ID
  rs16818452
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55567002 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                           Ttcctnt tccttttcct cctcctcctc tttctccccc
  tnttcctcTT GTTTTGTTtt tgttttttgt tttgaaggca gggtttctct gtntagtccc
  agctgtccgg gagctgtcca gganctgtcc agctctgtag accaggctgc cttnaacctt
  aagcactcca tntgcctttg cctcccaagt gctgggatta aaggcttgca cctttntggc
  tcagtttntt ttttacacaa tccaggcccn cctgttcagg gnggcatcac tcacagtggg
  S
  ggggcccttt cacatcaacc attaatcaag aaaatgcccg gggctgggga gatggctcag
  tgggtaagag cncccgactg ctnttccgaa ggtccagagt tcaaatccca gcaaccacat
  ggnngntcac aaccatctgt aatgagatct ggcgcctttt tttggagtgt ttgaagacag
  ctacagtgta cttacatata attaataaat aaatctttaa aaaaaaaaag aaaatgccct
  acagatattg ccctaggcca atcttctgga ggcatctctt cgggtgaggt tccttcCC  
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cJ	C57BL/6J	DBA/2J	LG/J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24773944	F12_AN7151_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cJ	C57BL/6J	DBA/2J	LG/J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16818452					SNP	C	C	C	C	G	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55567002 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi5669	CpG island 5669	614 bp distal
Cpgi5670	CpG island 5670	933 bp proximal
F12	coagulation factor XII (Hageman factor)	within coordinates
Rr480460	regulatory region 480460	697 bp distal
Rr480461	regulatory region 480461	1488 bp proximal
Rr480462	regulatory region 480462	1961 bp proximal