rs16818454 SNP Detail

Summary

• ID
  rs16818454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55566919 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  Ttcctnttcc ttttcctcct cctcctcttt ctccccctnt tcctcTTGTT TTGTTtttgt
  tttttgtttt gaaggcaggg tttctctgtn tagtcccagc tgtccgggag ctgtccagga
  nctgtccagc tctgtagacc aggctgcctt naaccttaag cactccatnt gcctttgcct
  cccaagtgct gggattaaag gcttgcacct ttntggctca gtttnttttt tacacaatcc
  aggcccncct gttcagggng gcatcactca cagtgggngg ggccctttca catcaaccat
  taatcaagaa aatgcccggg gctggggaga tggctcagtg ggtaagagcn cccgactgct
  Y
  ttccgaaggt ccagagttca aatcccagca accacatggn ngntcacaac catctgtaat
  gagatctggc gccttttttt ggagtgtttg aagacagcta cagtgtactt acatataatt
  aataaataaa tctttaaaaa aaaaaagaaa atgccctaca gatattgccc taggccaatc
  ttctggaggc atctcttcgg gtgaggttcc ttcCC                           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BUB	C57BL/6J	CAST/EiJ	NZW/Lac	SM/J
ss24773946	F12_AN7151_9	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BUB	C57BL/6J	CAST/EiJ	NZW/Lac	SM/J
rs16818454					SNP	T	T	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55566919 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi5669	CpG island 5669	531 bp distal
Cpgi5670	CpG island 5670	1016 bp proximal
F12	coagulation factor XII (Hageman factor)	within coordinates
Rr480460	regulatory region 480460	614 bp distal
Rr480461	regulatory region 480461	1571 bp proximal