rs16818456 SNP Detail

Summary

• ID
  rs16818456
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55566878 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTCA AATCCCAGCA ACCACATGGT
  K
  GCTCACAACC ATCTGTAACG AGATC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24773948	F12_AN7151_11	ROCHEBIO	RPAMM	f	SNP	T		T	T	G	G	T	T	G	T	G	G	T	T	T	T	T	T	T	G
ss39081609	mCV22796028	ABI	CRAMUS_MOUSE	r	SNP		A		A							C		A
ss149036836	ENSMUSSNP4949492	ENSEMBL	ENSEMBL_Sanger	r	SNP		A		A									A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16818456					SNP	T	T	T	T	G	G	T	T	G	T	G	G	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55566878 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi5669	CpG island 5669	490 bp distal
Cpgi5670	CpG island 5670	1057 bp proximal
F12	coagulation factor XII (Hageman factor)	within coordinates
Rr480460	regulatory region 480460	573 bp distal
Rr480461	regulatory region 480461	1612 bp proximal