rs16818457 SNP Detail

Summary

• ID
  rs16818457
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55566876 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                    Ttc ctnttccttt tcctcctcct cctctttctc cccctnttcc
  tcTTGTTTTG TTtttgtttt ttgttttgaa ggcagggttt ctctgtntag tcccagctgt
  ccgggagctg tccagganct gtccagctct gtagaccagg ctgccttnaa ccttaagcac
  tccatntgcc tttgcctccc aagtgctggg attaaaggct tgcacctttn tggctcagtt
  tnttttttac acaatccagg cccncctgtt cagggnggca tcactcacag tgggnggggc
  cctttcacat caaccattaa tcaagaaaat gcccggggct ggggagatgg ctcagtgggt
  aagagcnccc gactgctntt ccgaaggtcc agagttcaaa tcccagcaac cacatggnng
  S
  tcacaaccat ctgtaatgag atctggcgcc tttttttgga gtgtttgaag acagctacag
  tgtacttaca tataattaat aaataaatct ttaaaaaaaa aaagaaaatg ccctacagat
  attgccctag gccaatcttc tggaggcatc tcttcgggtg aggttccttc CC        
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24773949	F12_AN7151_12	ROCHEBIO	RPAMM	f	SNP	C	C	C	G	G	C	C	G	C	G	G	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16818457					SNP	C	C	C	G	G	C	C	G	C	G	G	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55566876 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi5669	CpG island 5669	488 bp distal
Cpgi5670	CpG island 5670	1059 bp proximal
F12	coagulation factor XII (Hageman factor)	within coordinates
Rr480460	regulatory region 480460	571 bp distal
Rr480461	regulatory region 480461	1614 bp proximal