rs16818609 SNP Detail

Summary

• ID
  rs16818609
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13089872 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCAGT TTTCCTACTC AGGAGGAGAG
  M
  TGAAGAGATG AAAATGAATG CCCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24774101	F10_AN7134_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	A	A	C	A
ss322503689	CHEV_8_13039872	CHEVERUD	SCREENING_POP	r	SNP														G							T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16818609					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13089872 () rs orientation: reverse

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659845	regulatory region 659845	1244 bp distal
Rr659846	regulatory region 659846	682 bp proximal
Tssr76330	transcription start site region 76330	1887 bp downstream
Tssr76331	transcription start site region 76331	568 bp downstream
Tssr76332	transcription start site region 76332	537 bp downstream
Tssr76333	transcription start site region 76333	513 bp downstream
Tssr76334	transcription start site region 76334	475 bp downstream
Tssr76335	transcription start site region 76335	323 bp downstream