rs16818612 SNP Detail

Summary

• ID
  rs16818612
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13089776 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCATTCATCT CCCACAGGTT
  AACTTGGCCA CACTCGCGAG TTCTCATTAC CCTTCTATGA TGTGCCATGT CTCTTCCCCT
  CAGTTTTCCT ACTCAGGAGG AGAGCTGAAG AGATGAAAAT GAATGCCCCA CAGGCAAAAG
  CCAGGATGCT ATGCCTGGTC ATCTCACCTC TAGGTTGCTT TCCCTGACTA TCCTTCCCAG
  S
  CTTGTGGGTA AAGGTCCAAC TCTGGGCCAG CCTGGAACCC TGTAGCAGCC CAGAAGATGG
  GATGGTCCAG CCTCAGCTAA TAAGTAACTG AGAGGACCCA GCCTGGACCT GGCCCGACTC
  ACCGTCTTCT CGTCGTCCTC GAAGATTTCA CGGACCTCTT CATAAGAACA AATTTCTTCC
  ATACACTCTC TTTCCAGATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24774104	F10_AN7134_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16818612					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13089776 () rs orientation: reverse

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659844	regulatory region 659844	1928 bp distal
Rr659845	regulatory region 659845	1148 bp distal
Rr659846	regulatory region 659846	778 bp proximal
Tssr76329	transcription start site region 76329	1938 bp downstream
Tssr76330	transcription start site region 76330	1791 bp downstream
Tssr76331	transcription start site region 76331	472 bp downstream
Tssr76332	transcription start site region 76332	441 bp downstream
Tssr76333	transcription start site region 76333	417 bp downstream
Tssr76334	transcription start site region 76334	379 bp downstream
Tssr76335	transcription start site region 76335	227 bp downstream