rs16818614 SNP Detail

Summary

• ID
  rs16818614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCAACAT GTGGGAACTG
  GACAAAGGCC TCCAGTAACA AAGCACACAG CCGACAGTGA GCAGCAGGAC CCTCCCACCC
  CTCGAGTCAG GACAGTTGGA GTCCTTGCTG GGTTCCGTGG ACAGTGTTCA CCATGTTATA
  ACACTTTAGT TCTGGGCTGC CAAACTTGAT TTTATTCAAA TCAGAACCTA TGGCTGCTGG
  Y
  GGCATGGTGG GTCTGTGTGA CCATCTAAGG AGTGAGCATA GTGTCCTAGC TAAGCCATTC
  ATGGAGACTG AGGTTAGTCC GAAGAGCGAG AGCTGGAAGC CCAGCCGGTC ACCTTCTTTC
  CCTGGGTAGG GACCTTTAAG CACCTGCTCT TTCCAGGCCT AGGAACAGCC TTGGGCAGAC
  AGGCCAAATG CCTTTGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss24774106	F10_AN7118_8	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C
ss322503685	CHEV_8_13038725	CHEVERUD	SCREENING_POP	f	SNP														T					C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs16818614					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088725 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1393 bp distal
Rr659844	regulatory region 659844	877 bp distal
Rr659845	regulatory region 659845	97 bp distal
Rr659846	regulatory region 659846	1829 bp proximal
Tssr76325	transcription start site region 76325	1422 bp downstream
Tssr76326	transcription start site region 76326	1373 bp downstream
Tssr76327	transcription start site region 76327	1363 bp downstream
Tssr76328	transcription start site region 76328	1335 bp downstream
Tssr76329	transcription start site region 76329	887 bp downstream
Tssr76330	transcription start site region 76330	740 bp downstream
Tssr76331	transcription start site region 76331	578 bp upstream
Tssr76332	transcription start site region 76332	601 bp upstream
Tssr76333	transcription start site region 76333	633 bp upstream
Tssr76334	transcription start site region 76334	644 bp upstream
Tssr76335	transcription start site region 76335	812 bp upstream