rs16818616 SNP Detail

Summary

• ID
  rs16818616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13089065 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCAC GCATGGATAA CTCTATTGCA
  Y
  GACCCTTCAG GAGGGCCAGC ATCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
ss24774108	F10_AN7119_2	ROCHEBIO	RPAMM	f	SNP	C		T	T	T	T	T	T		T	T	T	C	T	T			T	C	C		T		C	C		T		C
ss47391443	NES11508750	PERLEGEN	MM_PANEL2	r	SNP		G		A	A		A		A		A		G	A		A	A				G		A			G		G		G
ss322503686	CHEV_8_13039065	CHEVERUD	SCREENING_POP	r	SNP																		A											G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	WSB/EiJ
rs16818616					SNP	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	C	C	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47391443	NES11508750	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13089065 () rs orientation: reverse

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1733 bp distal
Rr659844	regulatory region 659844	1217 bp distal
Rr659845	regulatory region 659845	437 bp distal
Rr659846	regulatory region 659846	1489 bp proximal
Tssr76325	transcription start site region 76325	1762 bp downstream
Tssr76326	transcription start site region 76326	1713 bp downstream
Tssr76327	transcription start site region 76327	1703 bp downstream
Tssr76328	transcription start site region 76328	1675 bp downstream
Tssr76329	transcription start site region 76329	1227 bp downstream
Tssr76330	transcription start site region 76330	1080 bp downstream
Tssr76331	transcription start site region 76331	238 bp upstream
Tssr76332	transcription start site region 76332	261 bp upstream
Tssr76333	transcription start site region 76333	293 bp upstream
Tssr76334	transcription start site region 76334	304 bp upstream
Tssr76335	transcription start site region 76335	472 bp upstream