rs16818618 SNP Detail

Summary

• ID
  rs16818618
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13090395 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                    CCTTTTGCT TCCTGTCTGC CCTGAGGAGA
  GCATGCNCCC TCTGGCTGCT GCTATAGTGT CCTGCTTAAG CTCATGAAAT GAAGAGATCA
  CAGACCGAGA GAACCCTTTG ATAGTGAAAG CTAAAACACT TAATGCCTTT AGTCACAGCT
  ATCTGAAAGC AACTGCTCTG ATTGCACCCC TCAGGGGTCA CACTAGCNTA AACTCCCCTG
  S
  TGGTCTTGGT CACTCNATCC TGGCTACAGG TGACTGAGTT CCTAAGTGGA GCCAGTGGNG
  TGGCCNTGAA GTGGTGCAGG CCTGACTCAG TGACCTTCGA TGGTGCCAGT GGGCCTTGCA
  GCTTCCACTT GGGTCCAACA ACTGCCTGTT CCTTCCTAAG CTCTCNCTTG GCCCCCTTTT
  GTTTTGGGGG GGAAGGGGAC CCTGTTCTCT TTAGCNCATT CTTGTTTATT TAGGCTCAGA
  TTTCTNCTGG GCACCTGAAG GTCCTCTCCT AGGGAAAAGN AGCAGGCTCA CCCCTGCTGC
  TCATGGGTGG TGATTGGTGG TGCCGTGGGC CTCCTGTCAT GTGTCTGCGT GGCTGGCATG
  CTCTTCCTAG TCACAGAGCT CTTTACCCAC AGGAGTGGGA GGGTGAAGGC AATGGTGTGC
  AT                                                               
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24774110	F10_AN7120_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16818618					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13090395 () rs orientation: reverse

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659845	regulatory region 659845	1767 bp distal
Rr659846	regulatory region 659846	159 bp proximal
Tssr76331	transcription start site region 76331	1091 bp downstream
Tssr76332	transcription start site region 76332	1060 bp downstream
Tssr76333	transcription start site region 76333	1036 bp downstream
Tssr76334	transcription start site region 76334	998 bp downstream
Tssr76335	transcription start site region 76335	846 bp downstream