rs16818620 SNP Detail

Summary

• ID
  rs16818620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13090336 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGAG TTCCTAAGTG GAGCCAGTGG
  Y
  GTGGCCATGA AGTGGTGCAG GCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
ss24774112	F10_AN7120_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C	T	C
ss322503692	CHEV_8_13040336	CHEVERUD	SCREENING_POP	r	SNP														A							G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J
rs16818620					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13090336 () rs orientation: reverse

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659845	regulatory region 659845	1708 bp distal
Rr659846	regulatory region 659846	218 bp proximal
Tssr76331	transcription start site region 76331	1032 bp downstream
Tssr76332	transcription start site region 76332	1001 bp downstream
Tssr76333	transcription start site region 76333	977 bp downstream
Tssr76334	transcription start site region 76334	939 bp downstream
Tssr76335	transcription start site region 76335	787 bp downstream