rs16818746 SNP Detail

Summary

• ID
  rs16818746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGAGGG CAGAGAAAAT
  GACACCAAGA CAAAGCCACC CCAGACATAG AAGACACAGG AGCCAAGGCC CTGAGCTTGG
  GGAGCTCGGC TGGACCAGAG ACTGCACAAG GCAAAGCTGT ACAGGCAGTG AGCAGCTCCC
  AGGCCTGTTC CCCCCTCCCC AAAAAGGCTT ATTTTAGCTA GCCCAGAGCA GGCTCTGCTC
  R
  TGCAGAGCTG GCCTTGCTCC AGTACAAGGA GAAGCCTCAG CAACACTGGG CACCTCGCAT
  GTACTGGGGC CTTAATGAGG AAAACATCTC TGGGAAACCT GCTACCACTC AGTCGATGGG
  TCGATGTCAG TAAGCCACTG GCAAGGTCAG CCCCACAGAG ACAGCCACAT GTTTGAGGGC
  AGCAACATGT GGGAACTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss24774239	F10_AN7118_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs16818746					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088346 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1014 bp distal
Rr659844	regulatory region 659844	498 bp distal
Rr659845	regulatory region 659845	within coordinates
Tssr76325	transcription start site region 76325	1043 bp downstream
Tssr76326	transcription start site region 76326	994 bp downstream
Tssr76327	transcription start site region 76327	984 bp downstream
Tssr76328	transcription start site region 76328	956 bp downstream
Tssr76329	transcription start site region 76329	508 bp downstream
Tssr76330	transcription start site region 76330	361 bp downstream
Tssr76331	transcription start site region 76331	957 bp upstream
Tssr76332	transcription start site region 76332	980 bp upstream
Tssr76333	transcription start site region 76333	1012 bp upstream
Tssr76334	transcription start site region 76334	1023 bp upstream
Tssr76335	transcription start site region 76335	1191 bp upstream