rs16818748 SNP Detail

Summary

• ID
  rs16818748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAGACAC AGGAGCCAAG
  GCCCTGAGCT TGGGGAGCTC GGCTGGACCA GAGACTGCAC AAGGCAAAGC TGTACAGGCA
  GTGAGCAGCT CCCAGGCCTG TTCCCCCCTC CCCAAAAAGG CTTATTTTAG CTAGCCCAGA
  GCAGGCTCTG CTCGTGCAGA GCTGGCCTTG CTCCAGTACA AGGAGAAGCC TCAGCAACAC
  Y
  GGGCACCTCG CATGTACTGG GGCCTTAATG AGGAAAACAT CTCTGGGAAA CCTGCTACCA
  CTCAGTCGAT GGGTCGATGT CAGTAAGCCA CTGGCAAGGT CAGCCCCACA GAGACAGCCA
  CATGTTTGAG GGCAGCAACA TGTGGGAACT GGACAAAGGC CTCCAGTAAC AAAGCACACA
  GCCGACAGTG AGCAGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss24774241	F10_AN7118_3	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T		T	T	T	C	T	T			T	T		T		T	T			T
ss47391419	NES11508733	PERLEGEN	MM_PANEL2	f	SNP		T		T	T		T		T		T		C	T		T	T			T		T			T	T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs16818748					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47391419	NES11508733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088393 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1061 bp distal
Rr659844	regulatory region 659844	545 bp distal
Rr659845	regulatory region 659845	within coordinates
Tssr76325	transcription start site region 76325	1090 bp downstream
Tssr76326	transcription start site region 76326	1041 bp downstream
Tssr76327	transcription start site region 76327	1031 bp downstream
Tssr76328	transcription start site region 76328	1003 bp downstream
Tssr76329	transcription start site region 76329	555 bp downstream
Tssr76330	transcription start site region 76330	408 bp downstream
Tssr76331	transcription start site region 76331	910 bp upstream
Tssr76332	transcription start site region 76332	933 bp upstream
Tssr76333	transcription start site region 76333	965 bp upstream
Tssr76334	transcription start site region 76334	976 bp upstream
Tssr76335	transcription start site region 76335	1144 bp upstream