rs16818751 SNP Detail

Summary

• ID
  rs16818751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTGGGA AACCTGCTAC
  CACTCAGTCG ATGGGTCGAT GTCAGTAAGC CACTGGCAAG GTCAGCCCCA CAGAGACAGC
  CACATGTTTG AGGGCAGCAA CATGTGGGAA CTGGACAAAG GCCTCCAGTA ACAAAGCACA
  CAGCCGACAG TGAGCAGCAG GACCCTCCCA CCCCTCGAGT CAGGACAGTT GGAGTCCTTG
  Y
  TGGGTTCCGT GGACAGTGTT CACCATGTTA TAACACTTTA GTTCTGGGCT GCCAAACTTG
  ATTTTATTCA AATCAGAACC TATGGCTGCT GGTGGCATGG TGGGTCTGTG TGACCATCTA
  AGGAGTGAGC ATAGTGTCCT AGCTAAGCCA TTCATGGAGA CTGAGGTTAG TCCGAAGAGC
  GAGAGCTGGA AGCCCAGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss24774245	F10_AN7118_7	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C		C	C	C	C	C	C			C	T		C		T	T			T
ss47391434	NES11508745	PERLEGEN	MM_PANEL2	f	SNP		C		C	C		C		C		C		C	C		C	C			T		C			T	T		C
ss322503684	CHEV_8_13038632	CHEVERUD	SCREENING_POP	f	SNP																		C									T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs16818751					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47391434	NES11508745	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088632 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1300 bp distal
Rr659844	regulatory region 659844	784 bp distal
Rr659845	regulatory region 659845	4 bp distal
Rr659846	regulatory region 659846	1922 bp proximal
Tssr76325	transcription start site region 76325	1329 bp downstream
Tssr76326	transcription start site region 76326	1280 bp downstream
Tssr76327	transcription start site region 76327	1270 bp downstream
Tssr76328	transcription start site region 76328	1242 bp downstream
Tssr76329	transcription start site region 76329	794 bp downstream
Tssr76330	transcription start site region 76330	647 bp downstream
Tssr76331	transcription start site region 76331	671 bp upstream
Tssr76332	transcription start site region 76332	694 bp upstream
Tssr76333	transcription start site region 76333	726 bp upstream
Tssr76334	transcription start site region 76334	737 bp upstream
Tssr76335	transcription start site region 76335	905 bp upstream