rs16819280 SNP Detail

Summary

• ID
  rs16819280
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101167832 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GACAA GGAAGCGGGT GTCAGGACCA
  M
  AGAACAGAAG ACTCCCAATC CCTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774802	Nr4a1_JC9945_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819280					SNP	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101167832 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	1991 bp downstream
Rr510002	regulatory region 510002	1379 bp distal
Tssr133220	transcription start site region 133220	1960 bp downstream
Tssr133221	transcription start site region 133221	1900 bp downstream
Tssr133222	transcription start site region 133222	535 bp downstream
Tssr133223	transcription start site region 133223	125 bp upstream
Tssr133224	transcription start site region 133224	168 bp upstream
Tssr133225	transcription start site region 133225	179 bp upstream
Tssr133226	transcription start site region 133226	200 bp upstream
Tssr133227	transcription start site region 133227	208 bp upstream
Tssr133228	transcription start site region 133228	226 bp upstream
Tssr133229	transcription start site region 133229	237 bp upstream
Tssr133230	transcription start site region 133230	315 bp upstream
Tssr133231	transcription start site region 133231	347 bp upstream
Tssr133232	transcription start site region 133232	366 bp upstream
Tssr133233	transcription start site region 133233	394 bp upstream
Tssr133234	transcription start site region 133234	412 bp upstream
Tssr133235	transcription start site region 133235	445 bp upstream
Tssr133236	transcription start site region 133236	494 bp upstream
Tssr133237	transcription start site region 133237	516 bp upstream
Tssr133238	transcription start site region 133238	549 bp upstream
Tssr133239	transcription start site region 133239	591 bp upstream
Tssr133240	transcription start site region 133240	683 bp upstream
Tssr133241	transcription start site region 133241	700 bp upstream
Tssr133242	transcription start site region 133242	708 bp upstream
Tssr133243	transcription start site region 133243	734 bp upstream
Tssr133244	transcription start site region 133244	755 bp upstream
Tssr133245	transcription start site region 133245	799 bp upstream
Tssr133246	transcription start site region 133246	824 bp upstream
Tssr133247	transcription start site region 133247	912 bp upstream
Tssr133248	transcription start site region 133248	932 bp upstream
Tssr133249	transcription start site region 133249	1783 bp upstream
Tssr133250	transcription start site region 133250	1817 bp upstream
Tssr133251	transcription start site region 133251	1848 bp upstream
Tssr136545	transcription start site region 136545	348 bp downstream
Tssr136546	transcription start site region 136546	470 bp downstream
Tssr136547	transcription start site region 136547	546 bp downstream
Tssr136548	transcription start site region 136548	556 bp downstream
Tssr136549	transcription start site region 136549	590 bp downstream
Tssr136550	transcription start site region 136550	696 bp downstream
Tssr136551	transcription start site region 136551	772 bp downstream