rs16819281 SNP Detail

Summary

• ID
  rs16819281
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101167817 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCGGTCCTGG GCTCGTTGCT
  GGTGTTCCAT ATTGAGCTTG AATACAGGGC ATCTCTGGAG AGGGAGGAGA CACAAAGGAG
  GGAGGAGGAG GGGTCAGTAA GGGAAGCAAG AAACTTGGTA GGCCGGGGAG GGGGGTGGGG
  GGAGCCAGGT GGCAGGCCTA GACAAGGAAG CGGGTGTCAG GACCAAAGAA CAGAAGACTC
  S
  CAATCCCTCA GCCCAAATGC TATCTCAACG AGTCACAAAG CTCACAGGCA GAGACCAGGT
  CCAAAAGAGC TCAGTCCGAC GACCAGCCAC ACCCCAGTGG GCCGGGGGAG CTAGGAAAGG
  CTGTCCAGCA TGTCCCCCCA GGAACAGGGG GAAGCTGTGT TCCTCCAACC CCCAGCCTCC
  CTGTTCACAG GTCAGGGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774803	Nr4a1_JC9945_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819281					SNP	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101167817 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	1976 bp downstream
Rr510002	regulatory region 510002	1364 bp distal
Tssr133220	transcription start site region 133220	1945 bp downstream
Tssr133221	transcription start site region 133221	1885 bp downstream
Tssr133222	transcription start site region 133222	520 bp downstream
Tssr133223	transcription start site region 133223	140 bp upstream
Tssr133224	transcription start site region 133224	183 bp upstream
Tssr133225	transcription start site region 133225	194 bp upstream
Tssr133226	transcription start site region 133226	215 bp upstream
Tssr133227	transcription start site region 133227	223 bp upstream
Tssr133228	transcription start site region 133228	241 bp upstream
Tssr133229	transcription start site region 133229	252 bp upstream
Tssr133230	transcription start site region 133230	330 bp upstream
Tssr133231	transcription start site region 133231	362 bp upstream
Tssr133232	transcription start site region 133232	381 bp upstream
Tssr133233	transcription start site region 133233	409 bp upstream
Tssr133234	transcription start site region 133234	427 bp upstream
Tssr133235	transcription start site region 133235	460 bp upstream
Tssr133236	transcription start site region 133236	509 bp upstream
Tssr133237	transcription start site region 133237	531 bp upstream
Tssr133238	transcription start site region 133238	564 bp upstream
Tssr133239	transcription start site region 133239	606 bp upstream
Tssr133240	transcription start site region 133240	698 bp upstream
Tssr133241	transcription start site region 133241	715 bp upstream
Tssr133242	transcription start site region 133242	723 bp upstream
Tssr133243	transcription start site region 133243	749 bp upstream
Tssr133244	transcription start site region 133244	770 bp upstream
Tssr133245	transcription start site region 133245	814 bp upstream
Tssr133246	transcription start site region 133246	839 bp upstream
Tssr133247	transcription start site region 133247	927 bp upstream
Tssr133248	transcription start site region 133248	947 bp upstream
Tssr133249	transcription start site region 133249	1798 bp upstream
Tssr133250	transcription start site region 133250	1832 bp upstream
Tssr133251	transcription start site region 133251	1863 bp upstream
Tssr136545	transcription start site region 136545	363 bp downstream
Tssr136546	transcription start site region 136546	485 bp downstream
Tssr136547	transcription start site region 136547	561 bp downstream
Tssr136548	transcription start site region 136548	571 bp downstream
Tssr136549	transcription start site region 136549	605 bp downstream
Tssr136550	transcription start site region 136550	711 bp downstream
Tssr136551	transcription start site region 136551	787 bp downstream